{"id":3422,"date":"2009-06-25T09:48:39","date_gmt":"2009-06-25T09:48:39","guid":{"rendered":"http:\/\/www.flubu.com\/blog\/?p=3422"},"modified":"2009-06-25T09:48:39","modified_gmt":"2009-06-25T09:48:39","slug":"publication-record","status":"publish","type":"post","link":"https:\/\/www.flubu.com\/blog\/2009\/06\/25\/publication-record\/","title":{"rendered":"Publication record"},"content":{"rendered":"<p>As part of doing something else, I noticed that my publication record is increasing. This is not bad at all, considering that I&#8217;m not really an academic :)<\/p>\n<p>1: Stockinger H, Attwood T, Chohan SN, <strong>C\u00f4t\u00e9 R<\/strong>, Cudr\u00e9-Mauroux P, Falquet L,<br \/>\nFernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T,<br \/>\nPafilis E, Pagni M, Pettifer S, Phan I, Rahman N. Experience using web services<br \/>\nfor biological sequence analysis. Brief Bioinform. 2008 Nov;9(6):493-505. Epub<br \/>\n2008 Jul 11. PubMed PMID: 18621748.<\/p>\n<p>2: Jones P, <strong>C\u00f4t\u00e9 R.<\/strong> The PRIDE proteomics identifications database: data<br \/>\nsubmission, query, and dataset comparison. Methods Mol Biol. 2008;484:287-303.<br \/>\nPubMed PMID: 18592187.<\/p>\n<p>3: <strong>C\u00f4t\u00e9 RG<\/strong>, Jones P, Martens L, Apweiler R, Hermjakob H. The Ontology Lookup<br \/>\nService: more data and better tools for controlled vocabulary queries. Nucleic<br \/>\nAcids Res. 2008 Jul 1;36(Web Server issue):W372-6. Epub 2008 May 8. PubMed PMID:<br \/>\n18467421; PubMed Central PMCID: PMC2447739.<\/p>\n<p>4: Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG,<br \/>\nStevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P,<strong> C\u00f4t\u00e9 R<\/strong>, Hermjakob H,<br \/>\nPentony MM, Jones DT, Orengo CA, Hubbard SJ. ISPIDER Central: an integrated<br \/>\ndatabase web-server for proteomics. Nucleic Acids Res. 2008 Jul 1;36(Web Server<br \/>\nissue):W485-90. Epub 2008 Apr 25. PubMed PMID: 18440977; PubMed Central PMCID:<br \/>\nPMC2447780.<\/p>\n<p>5: Martens L, Jones P, <strong>C\u00f4t\u00e9 R<\/strong>. Using the Proteomics Identifications Database<br \/>\n(PRIDE). Curr Protoc Bioinformatics. 2008 Mar;Chapter 13:Unit 13.8. PubMed PMID:<br \/>\n18428683.<\/p>\n<p>6: Mueller M, Vizca\u00edno JA, Jones P, <strong>C\u00f4t\u00e9 R<\/strong>, Thorneycroft D, Apweiler R, Hermjakob<br \/>\nH, Martens L. Analysis of the experimental detection of central nervous<br \/>\nsystem-related genes in human brain and cerebrospinal fluid datasets. Proteomics.<br \/>\n2008 Mar;8(6):1138-48. PubMed PMID: 18283668.<\/p>\n<p>7: Jones P, <strong>C\u00f4t\u00e9 RG<\/strong>, Cho SY, Klie S, Martens L, Quinn AF, Thorneycroft D,<br \/>\nHermjakob H. PRIDE: new developments and new datasets. Nucleic Acids Res. 2008<br \/>\nJan;36(Database issue):D878-83. Epub 2007 Nov 22. PubMed PMID: 18033805; PubMed<br \/>\nCentral PMCID: PMC2238846.<\/p>\n<p>8: <strong>C\u00f4t\u00e9 RG<\/strong>, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R,<br \/>\nApweiler R, Hermjakob H. The Protein Identifier Cross-Referencing (PICR) service:<br \/>\nreconciling protein identifiers across multiple source databases. BMC<br \/>\nBioinformatics. 2007 Oct 18;8:401. PubMed PMID: 17945017; PubMed Central PMCID:<br \/>\nPMC2151082.<\/p>\n<p>9: <strong>C\u00f4t\u00e9 RG<\/strong>, Jones P, Apweiler R, Hermjakob H. The Ontology Lookup Service, a<br \/>\nlightweight cross-platform tool for controlled vocabulary queries. BMC<br \/>\nBioinformatics. 2006 Feb 28;7:97. PubMed PMID: 16507094; PubMed Central PMCID:<br \/>\nPMC1420335.<\/p>\n<p>10: Jones P, <strong>C\u00f4t\u00e9 RG<\/strong>, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H,<br \/>\nApweiler R. PRIDE: a public repository of protein and peptide identifications for<br \/>\nthe proteomics community. Nucleic Acids Res. 2006 Jan 1;34(Database<br \/>\nissue):D659-63. PubMed PMID: 16381953; PubMed Central PMCID: PMC1347500.<\/p>\n<p>11: Klie S, Martens L, Vizca\u00edno JA, <strong>C\u00f4t\u00e9 R<\/strong>, Jones P, Apweiler R, Hinneburg A,<br \/>\nHermjakob H. Analyzing large-scale proteomics projects with latent semantic<br \/>\nindexing. J Proteome Res. 2008 Jan;7(1):182-91. Epub 2007 Nov 30. PubMed PMID:<br \/>\n18047271.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>As part of doing something else, I noticed that my publication record is increasing. This is not bad at all, considering that I&#8217;m not really an academic :) 1: Stockinger H, Attwood T, Chohan SN, C\u00f4t\u00e9 R, Cudr\u00e9-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T,&#8230;<\/p>\n<p class=\"more-link-wrap\"><a href=\"https:\/\/www.flubu.com\/blog\/2009\/06\/25\/publication-record\/\" class=\"more-link\">Read More<span class=\"screen-reader-text\"> &ldquo;Publication record&rdquo;<\/span> &raquo;<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"ngg_post_thumbnail":0,"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[1],"tags":[40],"class_list":["post-3422","post","type-post","status-publish","format-standard","hentry","category-uncategorized","tag-work"],"jetpack_featured_media_url":"","jetpack_shortlink":"https:\/\/wp.me\/p3u9vK-Tc","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/posts\/3422","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/comments?post=3422"}],"version-history":[{"count":1,"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/posts\/3422\/revisions"}],"predecessor-version":[{"id":3423,"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/posts\/3422\/revisions\/3423"}],"wp:attachment":[{"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/media?parent=3422"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/categories?post=3422"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.flubu.com\/blog\/wp-json\/wp\/v2\/tags?post=3422"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}