As part of doing something else, I noticed that my publication record is increasing. This is not bad at all, considering that I’m not really an academic :)
1: Stockinger H, Attwood T, Chohan SN, Côté R, Cudré-Mauroux P, Falquet L,
Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T,
Pafilis E, Pagni M, Pettifer S, Phan I, Rahman N. Experience using web services
for biological sequence analysis. Brief Bioinform. 2008 Nov;9(6):493-505. Epub
2008 Jul 11. PubMed PMID: 18621748.
2: Jones P, Côté R. The PRIDE proteomics identifications database: data
submission, query, and dataset comparison. Methods Mol Biol. 2008;484:287-303.
PubMed PMID: 18592187.
3: Côté RG, Jones P, Martens L, Apweiler R, Hermjakob H. The Ontology Lookup
Service: more data and better tools for controlled vocabulary queries. Nucleic
Acids Res. 2008 Jul 1;36(Web Server issue):W372-6. Epub 2008 May 8. PubMed PMID:
18467421; PubMed Central PMCID: PMC2447739.
4: Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG,
Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H,
Pentony MM, Jones DT, Orengo CA, Hubbard SJ. ISPIDER Central: an integrated
database web-server for proteomics. Nucleic Acids Res. 2008 Jul 1;36(Web Server
issue):W485-90. Epub 2008 Apr 25. PubMed PMID: 18440977; PubMed Central PMCID:
PMC2447780.
5: Martens L, Jones P, Côté R. Using the Proteomics Identifications Database
(PRIDE). Curr Protoc Bioinformatics. 2008 Mar;Chapter 13:Unit 13.8. PubMed PMID:
18428683.
6: Mueller M, Vizcaíno JA, Jones P, Côté R, Thorneycroft D, Apweiler R, Hermjakob
H, Martens L. Analysis of the experimental detection of central nervous
system-related genes in human brain and cerebrospinal fluid datasets. Proteomics.
2008 Mar;8(6):1138-48. PubMed PMID: 18283668.
7: Jones P, Côté RG, Cho SY, Klie S, Martens L, Quinn AF, Thorneycroft D,
Hermjakob H. PRIDE: new developments and new datasets. Nucleic Acids Res. 2008
Jan;36(Database issue):D878-83. Epub 2007 Nov 22. PubMed PMID: 18033805; PubMed
Central PMCID: PMC2238846.
8: Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R,
Apweiler R, Hermjakob H. The Protein Identifier Cross-Referencing (PICR) service:
reconciling protein identifiers across multiple source databases. BMC
Bioinformatics. 2007 Oct 18;8:401. PubMed PMID: 17945017; PubMed Central PMCID:
PMC2151082.
9: Côté RG, Jones P, Apweiler R, Hermjakob H. The Ontology Lookup Service, a
lightweight cross-platform tool for controlled vocabulary queries. BMC
Bioinformatics. 2006 Feb 28;7:97. PubMed PMID: 16507094; PubMed Central PMCID:
PMC1420335.
10: Jones P, Côté RG, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H,
Apweiler R. PRIDE: a public repository of protein and peptide identifications for
the proteomics community. Nucleic Acids Res. 2006 Jan 1;34(Database
issue):D659-63. PubMed PMID: 16381953; PubMed Central PMCID: PMC1347500.
11: Klie S, Martens L, Vizcaíno JA, Côté R, Jones P, Apweiler R, Hinneburg A,
Hermjakob H. Analyzing large-scale proteomics projects with latent semantic
indexing. J Proteome Res. 2008 Jan;7(1):182-91. Epub 2007 Nov 30. PubMed PMID:
18047271.