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The beaver is a proud and noble animal

The beaver is a proud and noble animal

Notes from a bemused canuck

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One step closer, one step back.

Posted on July 12, 2010 By admin

I passed my bike theory test last Friday, so I am one step closer to achieving a goal I thought unreachable until quite recently. It went quite well, except for the teensy problem that almost got me an automatic fail.

I’d been studying for the thing for the previous week so I wasn’t really worried about it and I’d downloaded software to go over the hazard perception (HPT) portion of it. I was all set to go.

I got there with plenty of time to spare and with all the necessary paperwork. The dude at the reception counter told me to put my bag in a locker and to step into the exam room. As i was sitting down, I realized that I had my mobile in my back pocket, so I put it face down on the “place personal items here” area of the exam cubicle along with my provisional license and I started the test.

I breezed through the theory portion and then came the HPT section, where I was instructed to put on headphones and listen to an audio clip. Unbeknownst to me, my phone bleeped while I was listening to the clip, and later on while I was concentrating on the hazard videos (as it happened, it was the alarm on my calendar giving me an event reminder – for the test I was currently taking). At some point, the little lady looking over the exam room came in and asked who had a phone. I swear I never heard her even come in!

So when it bleeped the second time, apparently some people complained and the head honcho from the reception desk came in and spoke up loudly to ask who had the phone. I heard him that time and knew I was in trouble from the tonage. Since the English aren’t known for their sense of humour in official terms, I was rather worried. I did my best to concentrate on the task at hand – i.e. not failing the test – and figured I could deal with the consequences afterwards.

So when I was done, I came out of the room and the lady pointed me towards the head dude. She looked rather concerned for me. The dude then proceeded to tear me a new one for 10 solid minutes, telling me that in the 10 years he’d been doing this, nobody had ever been stupid enough to bring a phone in an exam room and that this was just not done in England. In the end, I looked pitiful enough and said yes sir, no sir, thank you sir enough that he stopped yelling at me and gave me my passing grade papers.

In the end, it was an honest mistake and I never meant to cause bother. But it doesn’t matter now, because I am one step closer to getting my full license and buying a motorcycle.

Amusingly though, when the guy who is taking the courses with me and was taking the exam with me left (after me) and asked the head dude what had happened with me, he was also regaled with a 10 minute barrage of verbiage.

I have my CBT this weekend and lessons a few weeks later and then I simply need to pass an eye test and a driving test. No pressure. Easy peasy. I’m freaking out.

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He is our son…

Posted on July 3, 2010July 3, 2010 By admin

image

So far today the bean has had his first taste of tea (which went down quite well), some sausage butty (which was inhaled) and some Starbucks smoothie. He is so our son…

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Pube waffles, indeed.

Posted on July 2, 2010 By admin

For reasons unknown, the database servers are being extraordinarily naughty at work and it’s getting impossible to get anything done. I’ve been trying to rebuild a biomart for the last 2 days and the scripts keep borking on me. Finally, it seems to be working now, but it’s sloooooooooooooooooooooooooooooooooooooow.

So, in the meantime, there’s naught else to do but browse on my new toy.

It’s bad. It’s really bad. I’ve already installed 6 games, a few productivity apps and the complete learner’s guide to the UK motorcycle theory test (which I need to study for because my exam is next Friday).

I love my phone.

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Quotes from last night

Posted on June 30, 2010June 30, 2010 By admin

There’s something very zen about watering your garden at 11:30pm when you’re high as a kite.

A conversation between two foxes:
– You ate your own cubs?
– You know, you get peckish, nothin’ in the fridge
– You had Muller rice!
– Yeah, but no spoon.
[later]
– Look what I just found, a spoon! It was just a waste of life after all!

Eat your Jesus biscuit! Eat it right up!

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Wheeeeeeee

Posted on June 29, 2010June 29, 2010 By admin

I just posted this from my new shinyness! I finally caved and bought an HTC Desire and my life will never be the same again :)

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I hate summer

Posted on June 24, 2010 By admin 2 Comments on I hate summer

Summer sucks. There should be a law abolishing summer. Give me fall/winter all year round. That way, I can still BBQ but without the f’n annoyances of bugs and allergies.

I hate summer.

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The stuff I’m doing

Posted on June 24, 2010 By admin

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Not in my happy place

Posted on June 22, 2010 By admin

I am very anxious at the moment. We’ve just had the boiler replaced, and we had to do unexpected repairs to the car in the past couple of months (two tires and a catalytic converter). Now it would seem that the car’s AC has packed it in. I don’t know how much that’s going to cost, but I do know we don’t have that money.

Beastie is pushing all of my buttons by being a tired git these days. The only time I seem to be happy to have him around is when he’s sleeping. Otherwise, I’m very quite happy to be at work and away from the tantrums. This will get worse before it gets better.

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Updated publication record

Posted on June 17, 2010June 17, 2010 By admin

I’m up to 17 articles, including 5 first author ones. How the heck did that happen??

1: Côté R, Reisinger F, Martens L, Barsnes H, Vizcaino JA, Hermjakob H. The Ontology Lookup Service: bigger and better. Nucleic Acids Res. 2010 May 11. PubMed PMID: 20460452.

2: Vizcaíno JA, Reisinger F, Côté R, Martens L. PRIDE: Data submission and analysis. Curr Protoc Protein Sci. 2010 Apr;Chapter 25:Unit 25.4. PubMed PMID: 20393974.

3: Côté RG, Reisinger F, Martens L. jmzML, an open-source Java API for mzML, the PSI standard for MS data. Proteomics. 2010 Apr;10(7):1332-5. PubMed PMID: 20127693.

4: Barsnes H, Côté RG, Eidhammer I, Martens L. OLS dialog: an open-source front end to the ontology lookup service. BMC Bioinformatics. 2010 Jan 17;11:34. PubMed PMID: 20078892; PubMed Central PMCID: PMC2823706.

5: Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. The Proteomics Identifications database: 2010 update. Nucleic Acids Res. 2010 Jan;38(Database issue):D736-42. Epub 2009 Nov 11. PubMed PMID: 19906717; PubMed Central PMCID: PMC2808904.

6: Vizcaíno JA, Côté R, Reisinger F, Foster JM, Mueller M, Rameseder J, Hermjakob H, Martens L. A guide to the Proteomics Identifications Database proteomics data repository. Proteomics. 2009 Sep;9(18):4276-83. PubMed PMID: 19662629.

7: Stockinger H, Attwood T, Chohan SN, Côté R, Cudré-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T, Pafilis E, Pagni M, Pettifer S, Phan I, Rahman N. Experience using web services for biological sequence analysis. Brief Bioinform. 2008 Nov;9(6):493-505. Epub 2008 Jul 11. PubMed PMID: 18621748.

8: Côté RG, Jones P, Martens L, Apweiler R, Hermjakob H. The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W372-6. Epub 2008 May 8. PubMed PMID: 18467421; PubMed Central PMCID: PMC2447739.

9: Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ. ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. Epub 2008 Apr 25. PubMed PMID: 18440977; PubMed Central PMCID: PMC2447780.

10: Martens L, Jones P, Côté R. Using the Proteomics Identifications Database (PRIDE). Curr Protoc Bioinformatics. 2008 Mar;Chapter 13:Unit 13.8. PubMed PMID: 18428683.

11: Mueller M, Vizcaíno JA, Jones P, Côté R, Thorneycroft D, Apweiler R, Hermjakob H, Martens L. Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets. Proteomics. 2008 Mar;8(6):1138-48. PubMed PMID: 18283668.

12: Klie S, Martens L, Vizcaíno JA, Côté R, Jones P, Apweiler R, Hinneburg A, Hermjakob H. Analyzing large-scale proteomics projects with latent semantic indexing. J Proteome Res. 2008 Jan;7(1):182-91. Epub 2007 Nov 30. PubMed PMID: 18047271.

13: Jones P, Côté R. The PRIDE proteomics identifications database: data submission, query, and dataset comparison. Methods Mol Biol. 2008;484:287-303. PubMed PMID: 18592187.

14: Jones P, Côté RG, Cho SY, Klie S, Martens L, Quinn AF, Thorneycroft D, Hermjakob H. PRIDE: new developments and new datasets. Nucleic Acids Res. 2008 Jan;36(Database issue):D878-83. Epub 2007 Nov 22. PubMed PMID: 18033805; PubMed Central PMCID: PMC2238846.

15: Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H. The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics. 2007 Oct 18;8:401. PubMed PMID: 17945017; PubMed Central PMCID: PMC2151082.

16: Côté RG, Jones P, Apweiler R, Hermjakob H. The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics. 2006 Feb 28;7:97. PubMed PMID: 16507094; PubMed Central PMCID: PMC1420335.

17: Jones P, Côté RG, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H, Apweiler R. PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D659-63. PubMed PMID: 16381953; PubMed Central PMCID: PMC1347500.

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Just one-third?

Posted on June 17, 2010 By admin

1/3? really? I was expecting more…

Pornography makes up 37 per cent of the total number of Web pages online, according to a new study published by Optenet. According to the report, which looked at a representative sample of around four million extracted URLs, adult content on the Internet increased by 17 per cent in the first quarter of 2010, as compared to the same period in 2009.

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